Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11617841	0.96[CEU][hapmap];0.97[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs11618509	0.83[EUR][1000 genomes]
rs11618738	0.83[EUR][1000 genomes]
rs12867633	0.95[EUR][1000 genomes]
rs12876856	0.96[EUR][1000 genomes]
rs1323112	0.83[EUR][1000 genomes]
rs1555559	0.83[EUR][1000 genomes]
rs1578872	0.83[EUR][1000 genomes]
rs34858262	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35082723	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs68164717	0.96[EUR][1000 genomes]
rs7319859	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7320575	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7321464	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7321816	0.88[EUR][1000 genomes]
rs7326351	0.97[EUR][1000 genomes]
rs7327967	0.83[EUR][1000 genomes]
rs7996239	0.82[EUR][1000 genomes]
rs9316600	0.83[EUR][1000 genomes]
rs9316602	0.83[EUR][1000 genomes]
rs9536321	0.97[EUR][1000 genomes]
rs9536327	0.84[EUR][1000 genomes]
rs9568783	0.82[EUR][1000 genomes]
rs9568784	0.83[EUR][1000 genomes]
rs9568785	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs9591484	0.96[EUR][1000 genomes]
rs9596733	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs986338	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv832613	chr13:53524319-53687188	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9536322	CCDC70	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53532800-53541000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:53533800-53540800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:53537600-53539200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr13:53538600-53541800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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