Variant report

Variant	rs9596733
Chromosome Location	chr13:53541303-53541304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11617841	0.84[CEU][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs11618509	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11618720	0.81[EUR][1000 genomes]
rs11618738	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12867633	0.81[EUR][1000 genomes]
rs12876856	0.82[EUR][1000 genomes]
rs1323112	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1555559	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1578872	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34858262	0.83[EUR][1000 genomes]
rs35082723	0.83[EUR][1000 genomes]
rs6561700	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6561701	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6561702	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs68164717	0.82[EUR][1000 genomes]
rs7319859	0.83[EUR][1000 genomes]
rs7320575	0.83[EUR][1000 genomes]
rs7321464	0.83[EUR][1000 genomes]
rs7326351	0.83[EUR][1000 genomes]
rs7327967	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7996239	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9316600	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9316602	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9316603	0.81[AMR][1000 genomes]
rs9536321	0.82[EUR][1000 genomes]
rs9536322	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9536327	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9568783	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9568784	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9568785	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9568787	0.81[AMR][1000 genomes]
rs9591484	0.82[EUR][1000 genomes]
rs986338	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv832613	chr13:53524319-53687188	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53538600-53541800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr13:53539200-53553200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr13:53540800-53543200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:53541000-53542400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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