Variant report

Variant	rs6823670
Chromosome Location	chr4:141937100-141937101
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1003257	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11932554	0.88[EUR][1000 genomes]
rs12019258	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13129199	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1364881	0.90[EUR][1000 genomes]
rs1425445	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17340802	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17343501	0.86[ASN][1000 genomes]
rs17425151	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1895762	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28445273	0.90[ASN][1000 genomes]
rs3851424	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3851425	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56288735	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59074378	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60293572	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62325721	0.90[EUR][1000 genomes]
rs62325722	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62325723	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62326020	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62326022	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62326024	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6537024	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73849462	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7665647	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7690780	0.86[ASN][1000 genomes]
rs7692524	0.86[ASN][1000 genomes]
rs9994743	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830090	chr4:141770494-141947764	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830091	chr4:141796603-141980546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141920400-141937800	Weak transcription	Right Ventricle	heart
2	chr4:141925200-141937200	Weak transcription	Right Atrium	heart
3	chr4:141925200-141942200	Weak transcription	Aorta	Aorta
4	chr4:141929200-141955400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:141932000-141939200	Weak transcription	Ovary	ovary
6	chr4:141932200-141938800	Enhancers	Fetal Heart	heart
7	chr4:141933600-141937400	Weak transcription	Colon Smooth Muscle	Colon
8	chr4:141933600-141938000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr4:141933800-141937200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr4:141933800-141937400	Weak transcription	Fetal Muscle Leg	muscle
11	chr4:141934000-141937200	Weak transcription	Left Ventricle	heart
12	chr4:141934000-141941400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr4:141935400-141937400	Weak transcription	Fetal Stomach	stomach
14	chr4:141937000-141937400	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr4:141937000-141938600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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