Variant report

No.	Distal block	Cell Line	Cell type
1	chr4:100578815..100580897-chr4:100583888..100586485,2	MCF-7	breast:
2	chr4:100483290..100486272-chr4:100578669..100581386,2	MCF-7	breast:
3	chr4:100483263..100486375-chr4:100577778..100581735,3	MCF-7	breast:
4	chr4:100578732..100580986-chr4:100870236..100872314,2	K562	blood:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13103481	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13120652	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs13120855	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs13146743	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17029260	0.91[AFR][1000 genomes]
rs17029263	0.91[AFR][1000 genomes]
rs17029264	0.91[AFR][1000 genomes]
rs17029267	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34098936	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34870956	0.87[AFR][1000 genomes]
rs34874297	0.89[AFR][1000 genomes]
rs35561084	0.84[AFR][1000 genomes]
rs35595171	0.84[AFR][1000 genomes]
rs6815796	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6821960	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6825904	0.91[AFR][1000 genomes]
rs6851824	0.89[AFR][1000 genomes]
rs71614608	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs71614611	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7695727	0.91[AFR][1000 genomes]
rs7698525	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs871320	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100575800-100579800	Weak transcription	Right Atrium	heart
2	chr4:100577000-100579800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:100577200-100580200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:100577200-100580600	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr4:100577400-100580800	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr4:100578000-100579800	Enhancers	Hela-S3	cervix
7	chr4:100578000-100580400	Enhancers	Fetal Heart	heart
8	chr4:100578200-100579600	Enhancers	NHEK	skin
9	chr4:100578400-100579600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:100578400-100579800	Enhancers	HMEC	breast
11	chr4:100578600-100579600	Weak transcription	Fetal Muscle Leg	muscle
12	chr4:100579200-100579600	Enhancers	Colon Smooth Muscle	Colon
13	chr4:100579200-100579800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:100579200-100580000	Enhancers	Stomach Smooth Muscle	stomach
15	chr4:100579200-100580200	Enhancers	Ovary	ovary
16	chr4:100579400-100579600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr4:100579400-100579800	Enhancers	Brain Anterior Caudate	brain
18	chr4:100579400-100580000	Enhancers	Psoas Muscle	Psoas
19	chr4:100579400-100580400	Enhancers	HSMMtube	muscle

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