Variant report

Variant	rs6867000
Chromosome Location	chr5:92578929-92578930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:92572759..92575011-chr5:92577902..92579568,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10428629	0.84[AMR][1000 genomes]
rs11950344	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11950401	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11951631	0.84[AMR][1000 genomes]
rs11956024	0.89[AMR][1000 genomes]
rs12657207	0.80[AFR][1000 genomes]
rs17083014	0.87[AMR][1000 genomes]
rs17083016	0.87[AMR][1000 genomes]
rs4072110	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59636184	0.85[AMR][1000 genomes]
rs6884717	0.83[AMR][1000 genomes]
rs72784413	0.82[AMR][1000 genomes]
rs72784415	0.82[AMR][1000 genomes]
rs72784426	0.82[AMR][1000 genomes]
rs72784436	0.87[AMR][1000 genomes]
rs72784437	0.89[AMR][1000 genomes]
rs72784438	0.87[AMR][1000 genomes]
rs72784445	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7341012	0.83[AMR][1000 genomes]
rs7725232	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7733839	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7738036	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830400	chr5:92515026-92738896	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830401	chr5:92518294-92703611	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv462252	chr5:92557969-92595939	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv598941	chr5:92557969-92595939	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv462253	chr5:92557969-92611658	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv598942	chr5:92557969-92611658	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1028785	chr5:92564952-92596445	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv882381	chr5:92576494-92649716	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92573000-92579000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr5:92573000-92581000	Weak transcription	NHLF	lung
3	chr5:92573600-92581000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:92573600-92585400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:92578200-92579000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr5:92578600-92579400	Weak transcription	Fetal Stomach	stomach
7	chr5:92578600-92579800	Enhancers	Fetal Lung	lung
8	chr5:92578800-92579600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr5:92578800-92579600	Enhancers	Fetal Kidney	kidney
10	chr5:92578800-92579800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr5:92578800-92579800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr5:92578800-92579800	Enhancers	HUVEC	blood vessel
13	chr5:92578800-92584000	Enhancers	HepG2	liver

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