Variant report

Variant	rs72784438
Chromosome Location	chr5:92560250-92560251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10428629	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11950344	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11950401	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11951631	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11956024	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17082959	0.82[AMR][1000 genomes]
rs17083014	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17083016	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4072110	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4526087	0.87[AMR][1000 genomes]
rs59636184	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6867000	0.87[AMR][1000 genomes]
rs6884717	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72784412	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72784413	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72784415	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72784426	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72784435	1.00[EUR][1000 genomes]
rs72784436	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72784437	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72784445	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7341012	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7725232	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7733839	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7738036	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9764312	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830400	chr5:92515026-92738896	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830401	chr5:92518294-92703611	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv508370	chr5:92539782-92575241	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv462252	chr5:92557969-92595939	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv598941	chr5:92557969-92595939	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv462253	chr5:92557969-92611658	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv598942	chr5:92557969-92611658	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92555800-92561600	Weak transcription	Ovary	ovary
2	chr5:92556400-92562200	Weak transcription	Fetal Lung	lung
3	chr5:92560200-92561600	Enhancers	HepG2	liver

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