Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10428629	0.84[AMR][1000 genomes]
rs11950344	0.82[AMR][1000 genomes]
rs11951631	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17082927	0.94[EUR][1000 genomes]
rs17082934	0.97[EUR][1000 genomes]
rs17083014	0.82[AMR][1000 genomes]
rs17083016	0.82[AMR][1000 genomes]
rs4526087	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59636184	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61453097	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6557062	1.00[EUR][1000 genomes]
rs6879703	0.88[EUR][1000 genomes]
rs6884717	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72782697	0.94[EUR][1000 genomes]
rs72784412	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72784413	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72784415	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72784426	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72784436	0.82[AMR][1000 genomes]
rs72784438	0.82[AMR][1000 genomes]
rs72784445	0.82[AMR][1000 genomes]
rs7341012	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7701217	1.00[EUR][1000 genomes]
rs7725232	0.82[AMR][1000 genomes]
rs7737511	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9764312	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1029175	chr5:92436038-92548473	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17082959	RHOBTB3	cis	parietal	SCAN
rs17082959	NR2F1	cis	parietal	SCAN
rs17082959	POU5F2	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92478000-92480600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr5:92478000-92480800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:92478000-92481000	Weak transcription	Osteobl	bone
4	chr5:92478200-92486200	Weak transcription	NHLF	lung

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