Variant report

Variant	rs6879703
Chromosome Location	chr5:92455748-92455749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10514371	0.82[EUR][1000 genomes]
rs11960764	0.82[EUR][1000 genomes]
rs17082876	1.00[ASN][1000 genomes]
rs17082914	1.00[ASN][1000 genomes]
rs17082927	0.83[EUR][1000 genomes]
rs17082934	0.85[EUR][1000 genomes]
rs17082959	0.88[EUR][1000 genomes]
rs17286491	1.00[ASN][1000 genomes]
rs17359880	1.00[ASN][1000 genomes]
rs17360032	1.00[ASN][1000 genomes]
rs17360156	1.00[ASN][1000 genomes]
rs17360219	1.00[ASN][1000 genomes]
rs4526087	0.88[EUR][1000 genomes]
rs61453097	0.88[EUR][1000 genomes]
rs6557062	0.88[EUR][1000 genomes]
rs6557065	0.82[EUR][1000 genomes]
rs6872680	0.82[EUR][1000 genomes]
rs6876147	1.00[ASN][1000 genomes]
rs72782697	0.83[EUR][1000 genomes]
rs72784407	0.82[EUR][1000 genomes]
rs72784408	0.82[EUR][1000 genomes]
rs7701217	0.88[EUR][1000 genomes]
rs7702897	1.00[ASN][1000 genomes]
rs7722832	0.82[EUR][1000 genomes]
rs7729235	0.82[EUR][1000 genomes]
rs7733100	0.81[EUR][1000 genomes]
rs7737511	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830399	chr5:92290915-92462490	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1029175	chr5:92436038-92548473	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92454200-92456400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:92454400-92456000	Weak transcription	Fetal Lung	lung
3	chr5:92454400-92456200	Weak transcription	Fetal Heart	heart
4	chr5:92454400-92456400	Weak transcription	HSMMtube	muscle
5	chr5:92454400-92462000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr5:92454400-92463000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:92454800-92455800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:92455200-92456800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:92455400-92456400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr5:92455400-92457000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:92455600-92456200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr5:92455600-92456800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr5:92455600-92456800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr5:92455600-92456800	Enhancers	HMEC	breast
15	chr5:92455600-92457000	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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