Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10428629	0.81[EUR][1000 genomes]
rs10514371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11951631	0.89[EUR][1000 genomes]
rs11960764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17288882	0.86[ASN][1000 genomes]
rs59636184	0.88[EUR][1000 genomes]
rs6557065	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6872680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6879703	0.82[EUR][1000 genomes]
rs6884717	0.88[EUR][1000 genomes]
rs72784408	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72784412	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72784413	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72784415	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72784417	0.85[EUR][1000 genomes]
rs72784426	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7341012	0.88[EUR][1000 genomes]
rs7722832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7729235	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7733100	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9764312	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1029175	chr5:92436038-92548473	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92481200-92489200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:92486600-92496400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:92486600-92498200	Weak transcription	Aorta	Aorta
4	chr5:92487400-92488800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:92487800-92494200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:92488000-92489200	Weak transcription	Fetal Lung	lung
7	chr5:92488000-92490800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr5:92488000-92494400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:92488200-92494600	Weak transcription	NHLF	lung
10	chr5:92488400-92489200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr5:92488400-92489800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:92488400-92490000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr5:92488400-92494200	Weak transcription	NHDF-Ad	bronchial
14	chr5:92488400-92494400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr5:92488400-92494400	Weak transcription	Osteobl	bone
16	chr5:92488600-92489600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr5:92488600-92494200	Weak transcription	HSMM	muscle

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