Variant report

Variant	rs72784412
Chromosome Location	chr5:92495857-92495858
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10428629	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10514371	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11950344	0.92[AMR][1000 genomes]
rs11950401	0.87[AMR][1000 genomes]
rs11951631	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11956024	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11960764	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17082959	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17083014	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17083016	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4072110	0.87[AMR][1000 genomes]
rs4526087	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59636184	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61453097	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6557062	0.81[EUR][1000 genomes]
rs6557065	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6872680	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6884717	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72784407	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72784408	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72784413	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72784415	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72784417	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72784426	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72784435	0.83[EUR][1000 genomes]
rs72784436	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72784437	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72784438	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72784445	0.92[AMR][1000 genomes]
rs7341012	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7341013	0.82[EUR][1000 genomes]
rs7701217	0.81[EUR][1000 genomes]
rs7722832	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7725232	0.92[AMR][1000 genomes]
rs7729235	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7733100	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7733839	0.83[AMR][1000 genomes]
rs7737511	0.80[EUR][1000 genomes]
rs7738036	0.87[AMR][1000 genomes]
rs9764312	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1029175	chr5:92436038-92548473	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92486600-92496400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:92486600-92498200	Weak transcription	Aorta	Aorta
3	chr5:92494000-92498200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:92494200-92496200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr5:92494800-92496000	Weak transcription	HSMM	muscle
6	chr5:92494800-92496600	Weak transcription	Fetal Kidney	kidney
7	chr5:92494800-92497600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:92494800-92498200	Weak transcription	Right Atrium	heart
9	chr5:92495000-92496400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:92495000-92496600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:92495000-92496600	Weak transcription	NHLF	lung
12	chr5:92495000-92497000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr5:92495000-92497000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:92495000-92497000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr5:92495000-92497000	Weak transcription	NH-A	brain
16	chr5:92495000-92497400	Weak transcription	NHEK	skin
17	chr5:92495000-92498000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr5:92495200-92496200	Weak transcription	Osteobl	bone
19	chr5:92495200-92496400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr5:92495200-92496400	Weak transcription	HMEC	breast
21	chr5:92495200-92497000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr5:92495200-92497000	Weak transcription	Adipose Nuclei	Adipose
23	chr5:92495200-92498000	Weak transcription	HSMMtube	muscle
24	chr5:92495800-92496800	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links