Variant report

Variant	rs4526087
Chromosome Location	chr5:92486203-92486204
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10428629	0.89[AMR][1000 genomes]
rs11950344	0.87[AMR][1000 genomes]
rs11950401	0.81[AMR][1000 genomes]
rs11951631	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11956024	0.84[AMR][1000 genomes]
rs17082927	0.94[EUR][1000 genomes]
rs17082934	0.97[EUR][1000 genomes]
rs17082959	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17083014	0.87[AMR][1000 genomes]
rs17083016	0.87[AMR][1000 genomes]
rs4072110	0.82[AMR][1000 genomes]
rs59636184	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61453097	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6557062	1.00[EUR][1000 genomes]
rs6879703	0.88[EUR][1000 genomes]
rs6884717	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72782697	0.94[EUR][1000 genomes]
rs72784412	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72784413	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72784415	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72784426	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72784436	0.87[AMR][1000 genomes]
rs72784437	0.84[AMR][1000 genomes]
rs72784438	0.87[AMR][1000 genomes]
rs72784445	0.87[AMR][1000 genomes]
rs7341012	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7701217	1.00[EUR][1000 genomes]
rs7725232	0.87[AMR][1000 genomes]
rs7737511	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7738036	0.82[AMR][1000 genomes]
rs9764312	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1029175	chr5:92436038-92548473	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92481000-92486400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:92481200-92489200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:92485800-92487600	Enhancers	HSMMtube	muscle
4	chr5:92486000-92487400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:92486000-92487400	Enhancers	Osteobl	bone
6	chr5:92486000-92487800	Enhancers	HUVEC	blood vessel
7	chr5:92486000-92488400	Enhancers	NHDF-Ad	bronchial
8	chr5:92486200-92486400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:92486200-92486400	Enhancers	Stomach Smooth Muscle	stomach
10	chr5:92486200-92486400	Flanking Active TSS	HSMM	muscle
11	chr5:92486200-92486600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr5:92486200-92486600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr5:92486200-92486600	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr5:92486200-92486600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr5:92486200-92486600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:92486200-92486600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr5:92486200-92486600	Enhancers	Fetal Muscle Leg	muscle
18	chr5:92486200-92486600	Enhancers	Lung	lung
19	chr5:92486200-92486600	Enhancers	Ovary	ovary
20	chr5:92486200-92486600	Enhancers	Spleen	Spleen
21	chr5:92486200-92486800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr5:92486200-92487600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr5:92486200-92487600	Enhancers	HMEC	breast
24	chr5:92486200-92487600	Enhancers	NHLF	lung
25	chr5:92486200-92487800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr5:92486200-92487800	Enhancers	NH-A	brain
27	chr5:92486200-92488400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr5:92486200-92488400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links