Variant report

Variant	rs11950401
Chromosome Location	chr5:92583373-92583374
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10428629	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11950344	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11951631	0.87[AMR][1000 genomes]
rs11956024	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17083014	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17083016	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4072110	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4526087	0.81[AMR][1000 genomes]
rs59636184	0.87[AMR][1000 genomes]
rs6867000	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6884717	0.85[AMR][1000 genomes]
rs72784412	0.87[AMR][1000 genomes]
rs72784413	0.84[AMR][1000 genomes]
rs72784415	0.84[AMR][1000 genomes]
rs72784426	0.90[AMR][1000 genomes]
rs72784435	0.90[EUR][1000 genomes]
rs72784436	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72784437	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72784438	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72784445	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7341012	0.85[AMR][1000 genomes]
rs7725232	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7733839	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7738036	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9764312	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830400	chr5:92515026-92738896	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830401	chr5:92518294-92703611	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv462252	chr5:92557969-92595939	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv598941	chr5:92557969-92595939	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv462253	chr5:92557969-92611658	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv598942	chr5:92557969-92611658	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1028785	chr5:92564952-92596445	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv882381	chr5:92576494-92649716	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92573600-92585400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:92578800-92584000	Enhancers	HepG2	liver
3	chr5:92579800-92584600	Weak transcription	HUVEC	blood vessel
4	chr5:92580800-92585000	Enhancers	Fetal Lung	lung
5	chr5:92581400-92584600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr5:92581400-92585200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:92581800-92583600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
8	chr5:92582000-92583600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
9	chr5:92582200-92585200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr5:92582200-92585400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr5:92582400-92584400	Weak transcription	Fetal Brain Male	brain
12	chr5:92582400-92584600	Weak transcription	Ovary	ovary
13	chr5:92582400-92585000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr5:92582400-92585000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr5:92582400-92585200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:92582400-92585200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:92582400-92585400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr5:92582400-92585400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr5:92582400-92585400	Weak transcription	Adipose Nuclei	Adipose
20	chr5:92582400-92585400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr5:92582400-92585400	Weak transcription	Fetal Muscle Leg	muscle
22	chr5:92582400-92585400	Weak transcription	NH-A	brain
23	chr5:92582600-92584600	Weak transcription	Fetal Stomach	stomach
24	chr5:92582600-92584600	Weak transcription	NHLF	lung
25	chr5:92582600-92585200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr5:92582600-92585400	Weak transcription	Brain Angular Gyrus	brain
27	chr5:92582600-92585400	Weak transcription	Colon Smooth Muscle	Colon
28	chr5:92583000-92583600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr5:92583000-92585000	Weak transcription	Brain Substantia Nigra	brain
30	chr5:92583000-92585400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr5:92583200-92583400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr5:92583200-92583600	Weak transcription	Fetal Kidney	kidney
33	chr5:92583200-92585000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr5:92583200-92585000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr5:92583200-92585200	Weak transcription	Brain Anterior Caudate	brain
36	chr5:92583200-92585400	Weak transcription	Stomach Smooth Muscle	stomach

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