Variant report

Variant	rs7733839
Chromosome Location	chr5:92587641-92587642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10428629	0.83[AMR][1000 genomes]
rs11950344	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11950401	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11951631	0.83[AMR][1000 genomes]
rs11956024	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12657207	0.90[AFR][1000 genomes]
rs17083014	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17083016	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4072110	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59636184	0.88[AMR][1000 genomes]
rs61513449	0.87[AFR][1000 genomes]
rs6867000	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6884717	0.85[AMR][1000 genomes]
rs72784412	0.83[AMR][1000 genomes]
rs72784413	0.80[AMR][1000 genomes]
rs72784415	0.80[AMR][1000 genomes]
rs72784417	0.84[AMR][1000 genomes]
rs72784426	0.85[AMR][1000 genomes]
rs72784435	0.88[EUR][1000 genomes]
rs72784436	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72784437	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72784438	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72784445	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7341012	0.85[AMR][1000 genomes]
rs7725232	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7738036	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830400	chr5:92515026-92738896	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830401	chr5:92518294-92703611	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv462252	chr5:92557969-92595939	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv598941	chr5:92557969-92595939	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv462253	chr5:92557969-92611658	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv598942	chr5:92557969-92611658	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1028785	chr5:92564952-92596445	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv882381	chr5:92576494-92649716	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92585800-92589600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:92585800-92593200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:92586000-92590200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:92586600-92588600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr5:92586600-92589800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:92586800-92588800	Weak transcription	Hela-S3	cervix
7	chr5:92586800-92590200	Weak transcription	Fetal Kidney	kidney
8	chr5:92586800-92591200	Weak transcription	Fetal Lung	lung
9	chr5:92587000-92591400	Weak transcription	Fetal Stomach	stomach
10	chr5:92587200-92593400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr5:92587600-92588000	Weak transcription	HUVEC	blood vessel

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