Variant report

Variant	rs61453097
Chromosome Location	chr5:92467802-92467803
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10428629	0.82[AMR][1000 genomes]
rs11951631	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17082927	0.94[EUR][1000 genomes]
rs17082934	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs17082959	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4526087	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59636184	0.80[EUR][1000 genomes]
rs6557062	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6879703	0.88[EUR][1000 genomes]
rs6884717	0.80[EUR][1000 genomes]
rs72782697	0.94[EUR][1000 genomes]
rs72784412	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72784413	0.81[EUR][1000 genomes]
rs72784415	0.81[EUR][1000 genomes]
rs72784426	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7341012	0.80[EUR][1000 genomes]
rs7701217	1.00[EUR][1000 genomes]
rs7737511	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9764312	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1029175	chr5:92436038-92548473	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92463000-92469000	Enhancers	Stomach Smooth Muscle	stomach
2	chr5:92463200-92477600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr5:92463400-92471400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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