Variant report

Variant	rs6867558
Chromosome Location	chr5:113452620-113452621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17136194	1.00[EUR][1000 genomes]
rs17136271	1.00[EUR][1000 genomes]
rs17136278	1.00[EUR][1000 genomes]
rs2974457	1.00[EUR][1000 genomes]
rs56823850	1.00[EUR][1000 genomes]
rs57178641	1.00[EUR][1000 genomes]
rs61188125	1.00[EUR][1000 genomes]
rs6876006	1.00[EUR][1000 genomes]
rs6879488	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6881490	1.00[EUR][1000 genomes]
rs6885474	1.00[EUR][1000 genomes]
rs73256306	1.00[EUR][1000 genomes]
rs73256373	1.00[EUR][1000 genomes]
rs73779586	1.00[EUR][1000 genomes]
rs73779601	1.00[EUR][1000 genomes]
rs73782123	1.00[EUR][1000 genomes]
rs7716446	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882726	chr5:113404933-113555626	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1020064	chr5:113418512-113492951	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113445600-113453200	Weak transcription	Right Ventricle	heart
2	chr5:113449600-113455200	Weak transcription	Psoas Muscle	Psoas
3	chr5:113452600-113453200	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr5:113452600-113456000	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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