Variant report
| Variant | rs73256306 |
|---|---|
| Chromosome Location | chr5:113335947-113335948 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs13187234 | 1.00[EUR][1000 genomes] |
| rs17136194 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17136271 | 1.00[EUR][1000 genomes] |
| rs17136278 | 1.00[EUR][1000 genomes] |
| rs2974457 | 1.00[EUR][1000 genomes] |
| rs56823850 | 1.00[EUR][1000 genomes] |
| rs57178641 | 1.00[EUR][1000 genomes] |
| rs61188125 | 0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6867558 | 1.00[EUR][1000 genomes] |
| rs6876006 | 1.00[EUR][1000 genomes] |
| rs6881490 | 1.00[EUR][1000 genomes] |
| rs6885474 | 1.00[EUR][1000 genomes] |
| rs6885883 | 1.00[EUR][1000 genomes] |
| rs73243066 | 1.00[EUR][1000 genomes] |
| rs73243069 | 1.00[EUR][1000 genomes] |
| rs73256373 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73779586 | 1.00[EUR][1000 genomes] |
| rs73779601 | 1.00[EUR][1000 genomes] |
| rs73782123 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7703903 | 1.00[EUR][1000 genomes] |
| rs7716446 | 1.00[EUR][1000 genomes] |
| rs7724198 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv471042 | chr5:113160490-113440892 | Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv599418 | chr5:113327561-113336598 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| 3 | nsv599419 | chr5:113327561-113339698 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| 4 | nsv599423 | chr5:113330738-113336598 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| 5 | nsv599427 | chr5:113330990-113336598 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| 6 | nsv599428 | chr5:113331136-113336598 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| 7 | nsv599429 | chr5:113331281-113336598 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| 8 | nsv599430 | chr5:113331546-113336598 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| 9 | nsv599431 | chr5:113331616-113336598 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:113335200-113336200 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
