Variant report

Variant	rs6885883
Chromosome Location	chr5:113260363-113260364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13187234	1.00[EUR][1000 genomes]
rs17136194	1.00[EUR][1000 genomes]
rs56823850	1.00[EUR][1000 genomes]
rs57178641	1.00[EUR][1000 genomes]
rs61188125	1.00[EUR][1000 genomes]
rs6876006	1.00[EUR][1000 genomes]
rs73243066	1.00[EUR][1000 genomes]
rs73243069	1.00[EUR][1000 genomes]
rs73256306	1.00[EUR][1000 genomes]
rs73256373	1.00[EUR][1000 genomes]
rs73779586	1.00[EUR][1000 genomes]
rs73779601	1.00[EUR][1000 genomes]
rs73782123	1.00[EUR][1000 genomes]
rs7703903	1.00[EUR][1000 genomes]
rs7716446	1.00[EUR][1000 genomes]
rs7724198	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471042	chr5:113160490-113440892	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113259400-113260600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links