Variant report

Variant	rs686915
Chromosome Location	chr3:59788889-59788890
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11926030	1.00[ASN][1000 genomes]
rs13064070	1.00[ASN][1000 genomes]
rs2605433	1.00[ASN][1000 genomes]
rs34613319	1.00[ASN][1000 genomes]
rs35236406	1.00[ASN][1000 genomes]
rs563600	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs589792	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60174430	1.00[ASN][1000 genomes]
rs620783	0.80[EUR][1000 genomes]
rs66463812	1.00[ASN][1000 genomes]
rs67272311	1.00[ASN][1000 genomes]
rs67804975	1.00[ASN][1000 genomes]
rs72886694	1.00[ASN][1000 genomes]
rs72888505	1.00[ASN][1000 genomes]
rs72888508	1.00[ASN][1000 genomes]
rs73090782	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1003387	chr3:59756364-59831340	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv460562	chr3:59760118-59826778	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv590381	chr3:59760118-59826778	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv590382	chr3:59763809-59793062	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv460563	chr3:59772342-59827390	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv590383	chr3:59772342-59827390	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59769800-59791400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr3:59770400-59825200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr3:59777200-59790800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr3:59778200-59811200	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr3:59782400-59794800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:59787000-59795800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr3:59787200-59789600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr3:59787200-59789800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr3:59787200-59791000	Weak transcription	Primary T cells from cord blood	blood
10	chr3:59787200-59802000	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr3:59787800-59789000	Weak transcription	Fetal Thymus	thymus
12	chr3:59787800-59789400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr3:59788400-59789800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr3:59788400-59797600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:59788600-59789400	Enhancers	H1 Cell Line	embryonic stem cell
16	chr3:59788600-59789400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr3:59788600-59789600	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr3:59788800-59789400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr3:59788800-59795400	Weak transcription	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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