Variant report
| Variant | rs60174430 |
|---|---|
| Chromosome Location | chr3:59633646-59633647 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr20:1798049..1800079-chr3:59632520..59635313,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000230839 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs11926030 | 1.00[ASN][1000 genomes] |
| rs13064070 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2605433 | 1.00[ASN][1000 genomes] |
| rs34613319 | 1.00[ASN][1000 genomes] |
| rs35236406 | 1.00[ASN][1000 genomes] |
| rs55633978 | 1.00[ASN][1000 genomes] |
| rs563600 | 1.00[ASN][1000 genomes] |
| rs589792 | 1.00[ASN][1000 genomes] |
| rs66463812 | 1.00[ASN][1000 genomes] |
| rs67272311 | 1.00[ASN][1000 genomes] |
| rs67804975 | 1.00[ASN][1000 genomes] |
| rs686915 | 1.00[ASN][1000 genomes] |
| rs72886694 | 1.00[ASN][1000 genomes] |
| rs72888505 | 1.00[ASN][1000 genomes] |
| rs72888508 | 1.00[ASN][1000 genomes] |
| rs73090736 | 1.00[ASN][1000 genomes] |
| rs73090782 | 1.00[ASN][1000 genomes] |
| rs9835405 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv876836 | chr3:59500394-59664687 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv834706 | chr3:59538151-59736014 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Genic enhancers | Chromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv998711 | chr3:59542279-59704503 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:59620400-59634400 | Weak transcription | Pancreas | Pancrea |
