Variant report

Variant	rs2605433
Chromosome Location	chr3:59782411-59782412
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11926030	1.00[ASN][1000 genomes]
rs13064070	1.00[ASN][1000 genomes]
rs34613319	1.00[ASN][1000 genomes]
rs35236406	1.00[ASN][1000 genomes]
rs55633978	1.00[ASN][1000 genomes]
rs563600	1.00[ASN][1000 genomes]
rs589792	1.00[ASN][1000 genomes]
rs60174430	1.00[ASN][1000 genomes]
rs66463812	1.00[ASN][1000 genomes]
rs67272311	1.00[ASN][1000 genomes]
rs67804975	1.00[ASN][1000 genomes]
rs686915	1.00[ASN][1000 genomes]
rs72886694	1.00[ASN][1000 genomes]
rs72888505	1.00[ASN][1000 genomes]
rs72888508	1.00[ASN][1000 genomes]
rs73090736	1.00[ASN][1000 genomes]
rs73090782	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1003387	chr3:59756364-59831340	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv460562	chr3:59760118-59826778	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv590381	chr3:59760118-59826778	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv590382	chr3:59763809-59793062	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv460563	chr3:59772342-59827390	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv590383	chr3:59772342-59827390	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59769800-59791400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr3:59770400-59825200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr3:59776800-59787000	Weak transcription	Primary T cells from cord blood	blood
4	chr3:59777000-59786800	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr3:59777200-59790800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr3:59777400-59785000	Weak transcription	Dnd41	blood
7	chr3:59778200-59811200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr3:59778400-59784400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:59778600-59782600	Enhancers	Fetal Thymus	thymus
10	chr3:59781400-59782600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr3:59781600-59782600	Enhancers	HSMM	muscle
12	chr3:59781800-59782600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:59781800-59782600	Enhancers	Osteobl	bone
14	chr3:59782000-59782600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:59782000-59782600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr3:59782200-59782600	Enhancers	NH-A	brain
17	chr3:59782200-59785000	Weak transcription	Thymus	Thymus
18	chr3:59782400-59784200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr3:59782400-59786400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:59782400-59794800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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