Variant report

Variant	rs35236406
Chromosome Location	chr3:59642183-59642184
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11926030	1.00[ASN][1000 genomes]
rs13064070	1.00[ASN][1000 genomes]
rs13090754	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2605433	1.00[ASN][1000 genomes]
rs34613319	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55633978	1.00[ASN][1000 genomes]
rs563600	1.00[ASN][1000 genomes]
rs589792	1.00[ASN][1000 genomes]
rs60174430	1.00[ASN][1000 genomes]
rs66463812	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67272311	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67804975	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs686915	1.00[ASN][1000 genomes]
rs72886694	1.00[ASN][1000 genomes]
rs72888505	1.00[ASN][1000 genomes]
rs72888508	1.00[ASN][1000 genomes]
rs73090736	1.00[ASN][1000 genomes]
rs73090782	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9835405	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876836	chr3:59500394-59664687	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv834706	chr3:59538151-59736014	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv998711	chr3:59542279-59704503	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59639600-59642200	Enhancers	Fetal Muscle Leg	muscle
2	chr3:59640600-59642200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr3:59640800-59650000	Weak transcription	Fetal Intestine Small	intestine
4	chr3:59641000-59642400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:59641000-59646400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:59641200-59643400	Weak transcription	Right Atrium	heart
7	chr3:59641200-59645200	Weak transcription	Gastric	stomach
8	chr3:59641200-59645600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr3:59641200-59646600	Weak transcription	Colon Smooth Muscle	Colon
10	chr3:59641200-59646600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr3:59641200-59647000	Weak transcription	Brain Angular Gyrus	brain
12	chr3:59641400-59643600	Weak transcription	Adipose Nuclei	Adipose
13	chr3:59641400-59646000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:59641400-59646800	Weak transcription	Fetal Stomach	stomach
15	chr3:59641400-59647000	Weak transcription	Esophagus	oesophagus
16	chr3:59641400-59647000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr3:59641600-59645600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:59641600-59645600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:59641600-59645800	Weak transcription	Osteobl	bone
20	chr3:59641600-59646000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:59641600-59646000	Weak transcription	NHEK	skin
22	chr3:59641800-59646000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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