Variant report

Variant	rs6869344
Chromosome Location	chr5:59606320-59606321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs16877866	1.00[YRI][hapmap]
rs16877868	1.00[YRI][hapmap]
rs16877877	1.00[ASW][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.88[YRI][hapmap]
rs16877886	1.00[YRI][hapmap]
rs16877887	1.00[YRI][hapmap]
rs16877888	1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs16877890	1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs16877893	1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs16877895	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs34114616	0.85[AFR][1000 genomes]
rs35250060	0.88[AFR][1000 genomes]
rs4460096	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4643905	1.00[MEX][hapmap]
rs57172565	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs60693366	0.85[AMR][1000 genomes]
rs61497235	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6861458	0.83[AMR][1000 genomes]
rs6865993	0.83[AMR][1000 genomes]
rs6874690	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6875020	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6885022	0.83[AMR][1000 genomes]
rs6889323	0.83[AMR][1000 genomes]
rs6891047	0.85[AMR][1000 genomes]
rs6892680	1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73104776	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73104780	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73104781	0.85[AMR][1000 genomes]
rs73106708	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73106740	0.85[AMR][1000 genomes]
rs73106742	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73106751	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73106753	0.85[AMR][1000 genomes]
rs73106756	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106759	0.85[AMR][1000 genomes]
rs73106769	0.85[AMR][1000 genomes]
rs73106773	0.85[AMR][1000 genomes]
rs73106774	0.85[AMR][1000 genomes]
rs73106777	0.85[AMR][1000 genomes]
rs7711198	0.87[YRI][hapmap]
rs7712352	0.93[AFR][1000 genomes]
rs7712697	0.89[AFR][1000 genomes]
rs7718384	1.00[YRI][hapmap];0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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