Variant report

Variant	rs6873039
Chromosome Location	chr5:68257347-68257348
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10035142	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10042265	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10055717	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10755226	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3922936	0.82[ASN][1000 genomes]
rs3922937	0.82[ASN][1000 genomes]
rs4373240	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4443379	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4976004	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4976007	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4976056	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4976057	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4976058	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6449989	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6450000	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6873113	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6874774	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6877507	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6877626	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6877919	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6882278	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6894214	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7446085	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7711962	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7712326	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7712349	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7729300	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7732664	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7732834	0.84[ASN][1000 genomes]
rs7733298	0.82[ASN][1000 genomes]
rs7733454	0.82[ASN][1000 genomes]
rs7734105	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830332	chr5:68238288-68282681	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68246200-68262200	Weak transcription	Esophagus	oesophagus
2	chr5:68249400-68258600	Weak transcription	Right Atrium	heart
3	chr5:68250200-68257800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr5:68250600-68258400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr5:68250800-68258000	Weak transcription	Fetal Heart	heart
6	chr5:68252200-68258400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:68254400-68258600	Weak transcription	Fetal Kidney	kidney
8	chr5:68254600-68258400	Weak transcription	Fetal Lung	lung
9	chr5:68255000-68257800	Weak transcription	Liver	Liver
10	chr5:68256400-68259200	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr5:68256600-68258600	Weak transcription	Primary B cells from peripheral blood	blood
12	chr5:68257000-68257800	Enhancers	Small Intestine	intestine
13	chr5:68257000-68258600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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