Variant report

Variant	rs6894214
Chromosome Location	chr5:68266553-68266554
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCDC125-4	chr5:68265940-68266904	XLOC_004860
2	lnc-CCDC125-4	chr5:68265940-68266904	XLOC_004860
3	lnc-CCDC125-4	chr5:68266519-68266904	ENSG00000249352
4	lnc-CCDC125-4	chr5:68265940-68266904	NONHSAT101876
5	lnc-CCDC125-4	chr5:68266266-68266579	ENSG00000249352.3

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10035142	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10042265	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10055717	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10755226	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10805425	0.91[ASN][1000 genomes]
rs10940191	0.91[ASN][1000 genomes]
rs12656917	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12697069	0.89[ASN][1000 genomes]
rs3922936	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3922937	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4336313	0.87[ASN][1000 genomes]
rs4373240	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4432834	0.92[ASN][1000 genomes]
rs4443379	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4594812	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4976004	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4976007	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4976056	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4976057	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4976058	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4976067	0.91[ASN][1000 genomes]
rs4976068	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5022687	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5022688	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6449989	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6450000	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6873039	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6873113	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6874327	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6874774	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6877507	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6877626	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6877919	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6882278	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6887916	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6888650	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7446085	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7711962	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7712326	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7712349	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7718238	0.91[ASN][1000 genomes]
rs7718531	0.91[ASN][1000 genomes]
rs7729300	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7732664	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7732834	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7733298	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7733454	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7734105	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9885496	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830332	chr5:68238288-68282681	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68263800-68271400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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