Variant report

Variant	rs4976067
Chromosome Location	chr5:68316368-68316369
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:68314784..68316658-chr5:68339254..68342073,2	K562	blood:
2	chr5:68311729..68314599-chr5:68315018..68317996,2	K562	blood:

Variant related genes	Relation type
ENSG00000250237	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10035142	0.91[ASN][1000 genomes]
rs10042265	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10055717	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs10755226	0.92[ASN][1000 genomes]
rs10805425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10940191	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10940193	0.81[EUR][1000 genomes]
rs12656917	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12697069	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2876310	0.82[ASN][1000 genomes]
rs3922936	0.96[ASN][1000 genomes]
rs3922937	0.96[ASN][1000 genomes]
rs4336313	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4373240	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4432834	0.92[ASN][1000 genomes]
rs4443379	0.85[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs4594812	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4976004	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4976007	0.91[ASN][1000 genomes]
rs4976056	0.94[ASN][1000 genomes]
rs4976057	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4976058	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4976068	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5022687	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5022688	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6449989	0.91[ASN][1000 genomes]
rs6450000	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6861079	0.84[ASN][1000 genomes]
rs6873113	0.80[CHB][hapmap]
rs6874327	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6874774	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6877507	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6877626	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6877919	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6882278	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6887916	0.98[ASN][1000 genomes]
rs6888650	0.87[ASN][1000 genomes]
rs6894214	0.91[ASN][1000 genomes]
rs7446085	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7448416	0.82[ASN][1000 genomes]
rs7711962	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7712326	0.92[ASN][1000 genomes]
rs7712349	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7718238	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7718531	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7722972	0.80[ASN][1000 genomes]
rs7727236	0.84[ASN][1000 genomes]
rs7729300	0.92[ASN][1000 genomes]
rs7732664	0.92[ASN][1000 genomes]
rs7732834	0.94[ASN][1000 genomes]
rs7733298	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7733454	0.96[ASN][1000 genomes]
rs7734105	0.91[ASN][1000 genomes]
rs9885496	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598413	chr5:68306058-68320702	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv598414	chr5:68313068-68320494	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68316200-68316600	Enhancers	Fetal Brain Male	brain

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