Variant report

Variant	rs12697069
Chromosome Location	chr5:68319687-68319688
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:68312049..68314191-chr5:68317998..68320759,3	K562	blood:
2	chr5:68319643..68320584-chr5:68379379..68380063,3	K562	blood:
3	chr5:68319293..68321703-chr5:68323264..68324934,2	K562	blood:
4	chr5:68312049..68313667-chr5:68319112..68320759,2	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10035142	0.89[ASN][1000 genomes]
rs10042265	0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs10055717	0.81[CHB][hapmap]
rs10755226	0.89[ASN][1000 genomes]
rs10805425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10940191	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10940193	0.83[EUR][1000 genomes]
rs12656917	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs180390	0.81[JPT][hapmap]
rs1982773	0.81[JPT][hapmap]
rs2876310	0.83[ASN][1000 genomes]
rs3922936	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3922937	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4336313	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4373240	0.91[ASN][1000 genomes]
rs4432834	0.89[ASN][1000 genomes]
rs4443379	0.86[CHB][hapmap];0.82[CHD][hapmap]
rs4594812	0.95[ASN][1000 genomes]
rs4976004	0.91[ASN][1000 genomes]
rs4976007	0.88[ASN][1000 genomes]
rs4976056	0.91[ASN][1000 genomes]
rs4976057	0.89[ASN][1000 genomes]
rs4976058	0.89[ASN][1000 genomes]
rs4976067	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4976068	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5022687	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5022688	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6449989	0.89[ASN][1000 genomes]
rs6450000	0.89[ASN][1000 genomes]
rs6861079	0.85[JPT][hapmap];0.84[MEX][hapmap];0.84[ASN][1000 genomes]
rs6873113	0.80[CHB][hapmap]
rs6874327	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6874774	0.89[ASN][1000 genomes]
rs6877507	0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs6877626	0.89[ASN][1000 genomes]
rs6877919	0.89[ASN][1000 genomes]
rs6882278	0.95[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs6887916	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6888650	0.84[ASN][1000 genomes]
rs6894214	0.89[ASN][1000 genomes]
rs7446085	0.89[ASN][1000 genomes]
rs7448416	0.83[ASN][1000 genomes]
rs7711962	0.89[ASN][1000 genomes]
rs7712326	0.89[ASN][1000 genomes]
rs7712349	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs7718238	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7718531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7722972	0.81[ASN][1000 genomes]
rs7727236	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs7729300	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7732664	0.89[ASN][1000 genomes]
rs7732834	0.91[ASN][1000 genomes]
rs7733298	0.93[ASN][1000 genomes]
rs7733454	0.93[ASN][1000 genomes]
rs7734105	0.88[ASN][1000 genomes]
rs9885496	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598413	chr5:68306058-68320702	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv598414	chr5:68313068-68320494	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3471635	chr5:68319062-68321290	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3471636	chr5:68319062-68321290	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv17753	chr5:68319571-68320758	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv598415	chr5:68319593-68320388	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv598416	chr5:68319593-68320443	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv598417	chr5:68319593-68320494	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv598418	chr5:68319593-68320598	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv598419	chr5:68319593-68320650	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv598420	chr5:68319593-68320702	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv598421	chr5:68319593-68321247	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv598422	chr5:68319687-68320388	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv598423	chr5:68319687-68320650	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	nsv598424	chr5:68319687-68320702	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68318400-68320200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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