Variant report

Variant	rs4336313
Chromosome Location	chr5:68320768-68320769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:68319293..68321703-chr5:68323264..68324934,2	K562	blood:
2	chr5:68320167..68322088-chr5:68342197..68344022,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCDC125-13	chr5:68320037-68320857	NONHSAT101881

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10035142	0.87[ASN][1000 genomes]
rs10042265	0.86[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs10755226	0.88[ASN][1000 genomes]
rs10805425	0.93[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.86[MEX][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10940191	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10940192	0.80[ASN][1000 genomes]
rs10940193	0.85[EUR][1000 genomes]
rs12656917	0.94[ASN][1000 genomes]
rs12697069	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs149292	0.81[CHB][hapmap]
rs180390	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1982773	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs2876310	0.84[ASN][1000 genomes]
rs3922936	0.91[ASN][1000 genomes]
rs3922937	0.91[ASN][1000 genomes]
rs4373240	0.89[ASN][1000 genomes]
rs4432834	0.88[ASN][1000 genomes]
rs4594812	0.94[ASN][1000 genomes]
rs4976004	0.89[ASN][1000 genomes]
rs4976007	0.87[ASN][1000 genomes]
rs4976056	0.89[ASN][1000 genomes]
rs4976057	0.88[ASN][1000 genomes]
rs4976058	0.88[ASN][1000 genomes]
rs4976067	0.93[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4976068	0.94[ASN][1000 genomes]
rs5022687	0.94[ASN][1000 genomes]
rs5022688	0.94[ASN][1000 genomes]
rs6449989	0.87[ASN][1000 genomes]
rs6450000	0.88[ASN][1000 genomes]
rs6861079	0.87[CHB][hapmap];0.83[CHD][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs6874327	0.94[ASN][1000 genomes]
rs6874774	0.88[ASN][1000 genomes]
rs6877507	0.85[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs6877626	0.88[ASN][1000 genomes]
rs6877919	0.88[ASN][1000 genomes]
rs6882278	0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs6887916	0.94[ASN][1000 genomes]
rs6888650	0.83[ASN][1000 genomes]
rs6894214	0.87[ASN][1000 genomes]
rs7446085	0.88[ASN][1000 genomes]
rs7448416	0.84[ASN][1000 genomes]
rs7710635	0.81[ASN][1000 genomes]
rs7711962	0.88[ASN][1000 genomes]
rs7712326	0.88[ASN][1000 genomes]
rs7712349	0.82[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs7718238	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7718531	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7722972	0.82[ASN][1000 genomes]
rs7727236	0.86[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs7729300	0.88[ASN][1000 genomes]
rs7732664	0.88[ASN][1000 genomes]
rs7732834	0.89[ASN][1000 genomes]
rs7733298	0.91[ASN][1000 genomes]
rs7733454	0.91[ASN][1000 genomes]
rs7734105	0.87[ASN][1000 genomes]
rs9885496	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3471635	chr5:68319062-68321290	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3471636	chr5:68319062-68321290	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv598421	chr5:68319593-68321247	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68320200-68320800	Enhancers	K562	blood
2	chr5:68320400-68327000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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