Variant report
| Variant | rs2876310 |
|---|---|
| Chromosome Location | chr5:68329193-68329194 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | EBF1 | chr5:68328956-68329218 | GM12878 | blood: | n/a | chr5:68329093-68329102 chr5:68329093-68329102 chr5:68329091-68329104 |
| 2 | EBF1 | chr5:68329000-68329230 | GM12878 | blood: | n/a | chr5:68329093-68329102 chr5:68329093-68329102 chr5:68329091-68329104 |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000249352 | TF binding region |
| ENSG00000249352 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs10037187 | 0.81[ASN][1000 genomes] |
| rs10805425 | 0.82[ASN][1000 genomes] |
| rs10940191 | 0.82[ASN][1000 genomes] |
| rs12656917 | 0.80[ASN][1000 genomes] |
| rs12697069 | 0.83[ASN][1000 genomes] |
| rs149292 | 0.90[ASN][1000 genomes] |
| rs1612772 | 0.81[ASN][1000 genomes] |
| rs164563 | 0.90[ASN][1000 genomes] |
| rs1650777 | 0.82[ASN][1000 genomes] |
| rs180390 | 0.91[ASN][1000 genomes] |
| rs182899 | 0.91[ASN][1000 genomes] |
| rs1982773 | 0.94[ASN][1000 genomes] |
| rs2260234 | 0.82[ASN][1000 genomes] |
| rs2327641 | 0.82[ASN][1000 genomes] |
| rs2434344 | 0.82[ASN][1000 genomes] |
| rs2434345 | 0.82[ASN][1000 genomes] |
| rs2450228 | 0.82[ASN][1000 genomes] |
| rs2450234 | 0.82[ASN][1000 genomes] |
| rs2637136 | 0.82[ASN][1000 genomes] |
| rs4336313 | 0.84[ASN][1000 genomes] |
| rs4594812 | 0.80[ASN][1000 genomes] |
| rs4976067 | 0.82[ASN][1000 genomes] |
| rs4976068 | 0.80[ASN][1000 genomes] |
| rs5022687 | 0.80[ASN][1000 genomes] |
| rs5022688 | 0.80[ASN][1000 genomes] |
| rs6861079 | 0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6874327 | 0.80[ASN][1000 genomes] |
| rs6887916 | 0.80[ASN][1000 genomes] |
| rs7448416 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7710635 | 0.97[ASN][1000 genomes] |
| rs7718238 | 0.82[ASN][1000 genomes] |
| rs7718531 | 0.82[ASN][1000 genomes] |
| rs7722972 | 0.98[ASN][1000 genomes] |
| rs7727236 | 0.83[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9885496 | 0.82[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:68329000-68330600 | Enhancers | Stomach Mucosa | stomach |
