Variant report

Variant	rs7722972
Chromosome Location	chr5:68332101-68332102
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:68327607..68329529-chr5:68331536..68333777,2	K562	blood:
2	chr5:68330991..68332756-chr5:68336294..68338800,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10037187	0.83[ASN][1000 genomes]
rs10805425	0.80[ASN][1000 genomes]
rs10940191	0.80[ASN][1000 genomes]
rs12697069	0.81[ASN][1000 genomes]
rs149292	0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1612772	0.83[ASN][1000 genomes]
rs164563	0.93[ASN][1000 genomes]
rs1650777	0.84[ASN][1000 genomes]
rs180390	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs182899	0.93[ASN][1000 genomes]
rs1982773	1.00[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.81[MKK][hapmap];0.88[TSI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2260234	0.84[ASN][1000 genomes]
rs2327641	0.84[ASN][1000 genomes]
rs2434344	0.84[ASN][1000 genomes]
rs2434345	0.84[ASN][1000 genomes]
rs2450228	0.84[ASN][1000 genomes]
rs2450234	0.84[ASN][1000 genomes]
rs2637136	0.84[ASN][1000 genomes]
rs2876310	0.98[ASN][1000 genomes]
rs4336313	0.82[ASN][1000 genomes]
rs4976067	0.80[ASN][1000 genomes]
rs6861079	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7448416	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7710635	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7718238	0.80[ASN][1000 genomes]
rs7727236	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8192269	1.00[YRI][hapmap]
rs9885496	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3374365	chr5:68331863-68332122	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68330600-68339000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:68331200-68332400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:68331600-68332200	Enhancers	HMEC	breast
4	chr5:68331600-68332400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:68331600-68332400	Enhancers	NHEK	skin
6	chr5:68332000-68332800	Weak transcription	K562	blood

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