Variant report

Variant	rs6861079
Chromosome Location	chr5:68322642-68322643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:68322328..68324467-chr5:68325179..68326947,2	K562	blood:
2	chr5:68321072..68322960-chr5:68665104..68666659,2	K562	blood:
3	chr5:68321118..68323616-chr5:68341647..68343951,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCDC125-4	chr5:68322582-68322938	XLOC_004860

Variant related genes	Relation type
ENSG00000249352	Chromatin interaction
ENSG00000085231	Chromatin interaction
ENSG00000152942	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10805425	0.84[ASN][1000 genomes]
rs10940191	0.84[ASN][1000 genomes]
rs10940193	0.84[EUR][1000 genomes]
rs12656917	0.82[ASN][1000 genomes]
rs12697069	0.84[ASN][1000 genomes]
rs149292	0.95[CHB][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs164563	0.89[ASN][1000 genomes]
rs1650777	0.81[ASN][1000 genomes]
rs180390	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs182899	0.90[ASN][1000 genomes]
rs1982773	1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.96[TSI][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2260234	0.81[ASN][1000 genomes]
rs2327641	0.81[ASN][1000 genomes]
rs2434344	0.81[ASN][1000 genomes]
rs2434345	0.81[ASN][1000 genomes]
rs2450228	0.81[ASN][1000 genomes]
rs2450234	0.81[ASN][1000 genomes]
rs2637136	0.81[ASN][1000 genomes]
rs2876310	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4336313	0.85[ASN][1000 genomes]
rs4594812	0.82[ASN][1000 genomes]
rs4976067	0.84[ASN][1000 genomes]
rs4976068	0.82[ASN][1000 genomes]
rs5022687	0.82[ASN][1000 genomes]
rs5022688	0.82[ASN][1000 genomes]
rs6874327	0.82[ASN][1000 genomes]
rs6887916	0.82[ASN][1000 genomes]
rs7448416	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7710635	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7718238	0.84[ASN][1000 genomes]
rs7718531	0.83[ASN][1000 genomes]
rs7722972	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7727236	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885496	0.84[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68320400-68327000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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