Variant report

Variant	rs7729300
Chromosome Location	chr5:68290613-68290614
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10035142	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10042265	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10055717	0.86[CHB][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10755226	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10805425	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10940191	0.92[ASN][1000 genomes]
rs12656917	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12697069	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3922936	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3922937	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4336313	0.88[ASN][1000 genomes]
rs4373240	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4432834	0.93[ASN][1000 genomes]
rs4443379	0.91[CHB][hapmap];0.83[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4594812	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4976004	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4976007	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4976056	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4976057	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4976058	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4976067	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4976068	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5022687	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5022688	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6449989	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6450000	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6873039	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6873113	0.86[CHB][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6874327	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6874774	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6877507	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6877626	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6877919	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6882278	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6887916	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6888650	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6894214	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7446085	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7711962	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7712326	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7712349	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7718238	0.92[ASN][1000 genomes]
rs7718531	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7732664	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7732834	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7733298	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7733454	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7734105	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9885496	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1001926	chr5:68281457-68292160	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68290000-68291000	Flanking Active TSS	GM12878-XiMat	blood
2	chr5:68290200-68291000	Enhancers	Fetal Lung	lung
3	chr5:68290200-68292000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr5:68290400-68290800	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr5:68290400-68290800	Flanking Active TSS	NHEK	skin
6	chr5:68290400-68292000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:68290400-68292000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:68290400-68292200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:68290600-68292200	Enhancers	HMEC	breast

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