The 2.0 version of rSNPBase

Variant report

Variant rs6892018
Chromosome Location chr5:112523917-112523918
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:112504800-112525600 Weak transcription Esophagus oesophagus
2 chr5:112507000-112526000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
3 chr5:112514400-112530600 Weak transcription Skeletal Muscle Male skeletal muscle
4 chr5:112515200-112526400 Weak transcription Lung lung
5 chr5:112515800-112530200 Weak transcription Psoas Muscle Psoas
6 chr5:112515800-112538000 Weak transcription Fetal Kidney kidney
7 chr5:112516400-112524000 Weak transcription Pancreatic Islets Pancreatic Islet
8 chr5:112517600-112525000 Enhancers Ovary ovary
9 chr5:112518600-112525600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr5:112518600-112538600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr5:112520400-112524800 Enhancers Cortex derived primary cultured neurospheres brain
12 chr5:112520600-112525800 Enhancers Fetal Heart heart
13 chr5:112520800-112524000 Enhancers Right Ventricle heart
14 chr5:112521000-112524400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
15 chr5:112521200-112524400 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
16 chr5:112522000-112525400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr5:112522000-112525800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
18 chr5:112522000-112538800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
19 chr5:112522200-112525400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr5:112522400-112524200 Weak transcription Brain Angular Gyrus brain
21 chr5:112522400-112525400 Weak transcription HMEC breast
22 chr5:112522400-112525400 Weak transcription NHEK skin
23 chr5:112522600-112525400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
24 chr5:112522600-112525600 Weak transcription ES-I3 Cell Line embryonic stem cell
25 chr5:112522600-112528200 Weak transcription Fetal Lung lung
26 chr5:112522600-112528600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
27 chr5:112522600-112530600 Weak transcription Adipose Nuclei Adipose
28 chr5:112522600-112534800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
29 chr5:112522600-112535200 Weak transcription Breast Myoepithelial Primary Cells Breast
30 chr5:112522600-112535200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
31 chr5:112522600-112541000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
32 chr5:112522800-112525600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr5:112522800-112525800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
34 chr5:112522800-112525800 Weak transcription HUES48 Cell Line embryonic stem cell
35 chr5:112522800-112525800 Weak transcription HUES6 Cell Line embryonic stem cell
36 chr5:112522800-112528600 Weak transcription iPS-15b Cell Line embryonic stem cell
37 chr5:112522800-112535000 Weak transcription iPS-18 Cell Line embryonic stem cell
38 chr5:112523000-112525600 Weak transcription Right Atrium heart
39 chr5:112523000-112528600 Weak transcription Fetal Muscle Leg muscle
40 chr5:112523200-112524600 Weak transcription Left Ventricle heart
41 chr5:112523200-112525600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
42 chr5:112523400-112524400 Enhancers Brain Germinal Matrix brain
43 chr5:112523600-112524200 Enhancers Liver Liver
44 chr5:112523600-112524800 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015