Variant report

Variant	rs73237148
Chromosome Location	chr5:112456183-112456184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112455253..112458185-chr5:112461323..112464102,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10067575	1.00[AMR][1000 genomes]
rs1345079	1.00[AMR][1000 genomes]
rs1443688	1.00[AMR][1000 genomes]
rs1443697	1.00[AMR][1000 genomes]
rs1443698	1.00[AMR][1000 genomes]
rs1584057	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1867326	1.00[AMR][1000 genomes]
rs1982287	1.00[AMR][1000 genomes]
rs2416308	1.00[AMR][1000 genomes]
rs2900068	1.00[AMR][1000 genomes]
rs2900069	1.00[AMR][1000 genomes]
rs4235795	1.00[AMR][1000 genomes]
rs56096608	1.00[AMR][1000 genomes]
rs57288647	1.00[AMR][1000 genomes]
rs60422435	1.00[AMR][1000 genomes]
rs6594694	1.00[AMR][1000 genomes]
rs6862997	1.00[AMR][1000 genomes]
rs6892018	1.00[AMR][1000 genomes]
rs73239119	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73239122	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73239127	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73239158	1.00[AMR][1000 genomes]
rs73244727	1.00[AMR][1000 genomes]
rs73244751	1.00[AMR][1000 genomes]
rs73778907	1.00[AMR][1000 genomes]
rs73778912	1.00[AMR][1000 genomes]
rs73778915	1.00[AMR][1000 genomes]
rs73778917	1.00[AMR][1000 genomes]
rs73778920	1.00[AMR][1000 genomes]
rs73778923	1.00[AMR][1000 genomes]
rs73781500	1.00[AMR][1000 genomes]
rs73783203	1.00[AMR][1000 genomes]
rs73789281	1.00[AMR][1000 genomes]
rs935164	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018344	chr5:112390951-112458853	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112431200-112461600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr5:112434000-112459200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:112450000-112459200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr5:112451000-112460600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:112451000-112478800	Weak transcription	Aorta	Aorta
6	chr5:112451800-112456200	Enhancers	Ovary	ovary
7	chr5:112452600-112456800	Enhancers	Fetal Stomach	stomach
8	chr5:112452800-112456200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr5:112452800-112456200	Enhancers	Right Ventricle	heart
10	chr5:112452800-112457200	Enhancers	Left Ventricle	heart
11	chr5:112453000-112456200	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr5:112453400-112456200	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr5:112453600-112457200	Enhancers	Right Atrium	heart
14	chr5:112453800-112461800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr5:112454200-112456200	Enhancers	Placenta	Placenta
16	chr5:112454200-112457600	Enhancers	Liver	Liver
17	chr5:112454400-112456200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr5:112454400-112456200	Enhancers	Fetal Kidney	kidney
19	chr5:112454400-112456200	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr5:112454600-112457200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr5:112454600-112459000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr5:112454600-112459400	Enhancers	NHDF-Ad	bronchial
23	chr5:112454600-112460600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr5:112454800-112460400	Weak transcription	Brain Hippocampus Middle	brain
25	chr5:112454800-112460600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr5:112455000-112456600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr5:112455000-112460000	Weak transcription	Fetal Brain Male	brain
28	chr5:112455000-112462200	Enhancers	Fetal Heart	heart
29	chr5:112455200-112459200	Weak transcription	Pancreas	Pancrea
30	chr5:112455200-112459400	Weak transcription	Brain Germinal Matrix	brain
31	chr5:112455200-112459400	Weak transcription	Fetal Brain Female	brain
32	chr5:112455400-112456400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr5:112455400-112458000	Weak transcription	NHLF	lung
34	chr5:112455400-112458400	Weak transcription	Fetal Muscle Trunk	muscle
35	chr5:112455400-112459200	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr5:112455400-112459200	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr5:112455400-112459600	Weak transcription	Colon Smooth Muscle	Colon
38	chr5:112455400-112460200	Weak transcription	Stomach Smooth Muscle	stomach
39	chr5:112455400-112461400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr5:112455400-112461400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr5:112455600-112456600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr5:112455600-112456800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr5:112455600-112456800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr5:112455600-112457400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr5:112455600-112457400	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr5:112455600-112457400	Weak transcription	Adipose Nuclei	Adipose
47	chr5:112455600-112458200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr5:112455600-112460000	Weak transcription	Fetal Lung	lung
49	chr5:112455800-112456200	Weak transcription	HMEC	breast
50	chr5:112455800-112456600	Enhancers	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links