The 2.0 version of rSNPBase

Variant report

Variant rs73778923
Chromosome Location chr5:112431840-112431841
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:112384000-112453000 Weak transcription Rectal Mucosa Donor 29 rectum
2 chr5:112391600-112439000 Weak transcription Gastric stomach
3 chr5:112399000-112432800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
4 chr5:112399800-112441800 Weak transcription Sigmoid Colon Sigmoid Colon
5 chr5:112404400-112436800 Weak transcription Fetal Brain Male brain
6 chr5:112411200-112443400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
7 chr5:112412000-112435200 Weak transcription Pancreatic Islets Pancreatic Islet
8 chr5:112412200-112432400 Weak transcription Fetal Intestine Small intestine
9 chr5:112417800-112436800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
10 chr5:112418400-112441600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
11 chr5:112418600-112436600 Weak transcription H9 Cell Line embryonic stem cell
12 chr5:112418600-112441400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr5:112419600-112436600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
14 chr5:112420800-112436800 Weak transcription HUES48 Cell Line embryonic stem cell
15 chr5:112421000-112437000 Weak transcription HUES6 Cell Line embryonic stem cell
16 chr5:112421000-112439000 Weak transcription iPS-18 Cell Line embryonic stem cell
17 chr5:112421400-112437200 Weak transcription iPS-20b Cell Line embryonic stem cell
18 chr5:112424200-112435600 Weak transcription Small Intestine intestine
19 chr5:112424400-112448000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
20 chr5:112426000-112435200 Weak transcription Adipose Nuclei Adipose
21 chr5:112426000-112441600 Weak transcription Colon Smooth Muscle Colon
22 chr5:112426200-112437400 Weak transcription Aorta Aorta
23 chr5:112426200-112445000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr5:112426600-112435600 Weak transcription Rectal Smooth Muscle rectum
25 chr5:112426600-112453000 Weak transcription Duodenum Smooth Muscle Duodenum
26 chr5:112426800-112435400 Weak transcription Fetal Lung lung
27 chr5:112426800-112450200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
28 chr5:112426800-112450600 Weak transcription Primary T cells from cord blood blood
29 chr5:112426800-112450600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
30 chr5:112426800-112453800 Weak transcription HSMMtube muscle
31 chr5:112427000-112440800 Weak transcription NH-A brain
32 chr5:112427000-112453800 Weak transcription Fetal Kidney kidney
33 chr5:112427200-112434400 Weak transcription Stomach Smooth Muscle stomach
34 chr5:112427200-112448200 Weak transcription Muscle Satellite Cultured Cells --
35 chr5:112427600-112435600 Weak transcription Skeletal Muscle Female skeletal muscle
36 chr5:112427600-112441600 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
37 chr5:112427600-112442000 Weak transcription Skeletal Muscle Male skeletal muscle
38 chr5:112427600-112443200 Weak transcription Brain Substantia Nigra brain
39 chr5:112428000-112440200 Strong transcription Liver Liver
40 chr5:112428400-112440200 Strong transcription Fetal Stomach stomach
41 chr5:112428600-112445000 Weak transcription Placenta Placenta
42 chr5:112428800-112432200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr5:112428800-112433400 Weak transcription HMEC breast
44 chr5:112429200-112432000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr5:112429200-112435400 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
46 chr5:112429600-112433400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
47 chr5:112429800-112437400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
48 chr5:112430400-112432800 Strong transcription Esophagus oesophagus
49 chr5:112430400-112434000 Strong transcription Fetal Muscle Leg muscle
50 chr5:112430400-112441000 Strong transcription Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015