Variant report

Variant	rs6899536
Chromosome Location	chr6:35381539-35381540
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35380537..35383478-chr6:35394277..35398227,3	K562	blood:
2	chr6:35379744..35382549-chr6:35384456..35386159,2	K562	blood:
3	chr6:35311343..35313343-chr6:35379052..35381672,2	MCF-7	breast:
4	chr6:35369022..35371530-chr6:35380488..35382015,2	MCF-7	breast:
5	chr6:35374379..35377300-chr6:35379343..35382186,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2016520	0.83[EUR][1000 genomes]
rs2038067	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2076166	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2076169	0.90[ASN][1000 genomes]
rs2267665	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2267668	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2267669	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6457819	0.82[ASN][1000 genomes]
rs760783	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7749160	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7749165	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9380506	0.81[ASN][1000 genomes]
rs9462082	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470015	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9470024	0.82[ASN][1000 genomes]
rs9794	0.92[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv462907	chr6:35333799-35408959	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv602908	chr6:35333799-35408959	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv602909	chr6:35356640-35423489	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv470812	chr6:35374461-35418118	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
7	nsv885799	chr6:35378778-35442397	Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
8	nsv462908	chr6:35378778-35457396	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
9	nsv602910	chr6:35378778-35457396	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
10	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35360000-35382600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:35361800-35385800	Weak transcription	Small Intestine	intestine
3	chr6:35366200-35386800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:35366400-35382800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:35369200-35382600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:35369400-35382600	Weak transcription	NH-A	brain
7	chr6:35370600-35393200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:35371000-35382400	Weak transcription	Right Atrium	heart
9	chr6:35371200-35382400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr6:35371200-35382400	Weak transcription	Stomach Mucosa	stomach
11	chr6:35371200-35383200	Weak transcription	Fetal Kidney	kidney
12	chr6:35372000-35382400	Weak transcription	Fetal Heart	heart
13	chr6:35373400-35382400	Weak transcription	Brain Germinal Matrix	brain
14	chr6:35375200-35382600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr6:35375600-35387000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr6:35377600-35382400	Strong transcription	Fetal Muscle Leg	muscle
17	chr6:35377600-35382400	Strong transcription	Osteobl	bone
18	chr6:35377600-35386000	Weak transcription	HUVEC	blood vessel
19	chr6:35377800-35385600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr6:35377800-35395000	Weak transcription	K562	blood
21	chr6:35378000-35381800	Strong transcription	Stomach Smooth Muscle	stomach
22	chr6:35378000-35382400	Strong transcription	Fetal Stomach	stomach
23	chr6:35378000-35382600	Strong transcription	Sigmoid Colon	Sigmoid Colon
24	chr6:35378000-35386400	Strong transcription	Spleen	Spleen
25	chr6:35378200-35381800	Strong transcription	Skeletal Muscle Male	skeletal muscle
26	chr6:35378200-35382400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr6:35378200-35382400	Strong transcription	Esophagus	oesophagus
28	chr6:35378200-35382800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr6:35378400-35381800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr6:35378400-35381800	Strong transcription	Brain Anterior Caudate	brain
31	chr6:35378400-35381800	Strong transcription	Brain Hippocampus Middle	brain
32	chr6:35378400-35382000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr6:35378400-35382200	Strong transcription	Fetal Muscle Trunk	muscle
34	chr6:35378400-35385600	Strong transcription	Fetal Intestine Small	intestine
35	chr6:35378400-35386800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr6:35378600-35381800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr6:35378600-35382000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:35378600-35382200	Strong transcription	NHLF	lung
39	chr6:35378600-35382400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:35378600-35382400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr6:35378600-35382600	Strong transcription	Fetal Intestine Large	intestine
42	chr6:35378600-35382800	Strong transcription	Adipose Nuclei	Adipose
43	chr6:35378800-35381800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:35378800-35381800	Strong transcription	Placenta Amnion	Placenta Amnion
45	chr6:35378800-35382600	Strong transcription	Duodenum Mucosa	Duodenum
46	chr6:35378800-35383400	Strong transcription	Dnd41	blood
47	chr6:35378800-35393400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:35379000-35381600	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr6:35379000-35381800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr6:35379000-35382000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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