Variant report

Variant	rs6900466
Chromosome Location	chr6:146137045-146137046
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr6:146134766-146137388	H1-neurons	neurons:	n/a	chr6:146135688-146135708 chr6:146135692-146135705 chr6:146135569-146135582 chr6:146137142-146137162
2	MAFK	chr6:146137004-146137513	K562	blood:	n/a	chr6:146137435-146137445
3	RCOR1	chr6:146136868-146137153	K562	blood:	n/a	n/a
4	POLR2A	chr6:146135175-146137330	GM19099	blood:	n/a	n/a
5	POLR2A	chr6:146135008-146137235	GM12891	blood:	n/a	n/a
6	POLR2A	chr6:146134516-146137321	K562	blood:	n/a	n/a
7	HCFC1	chr6:146136794-146137153	K562	blood:	n/a	n/a
8	POLR2A	chr6:146134981-146137846	GM12878	blood:	n/a	n/a
9	RCOR1	chr6:146134316-146137364	K562	blood:	n/a	n/a
10	POLR2A	chr6:146134876-146137617	HepG2	liver:	n/a	n/a
11	SIN3A	chr6:146134385-146137137	H1-hESC	embryonic stem cell:	n/a	chr6:146135695-146135708 chr6:146135627-146135640 chr6:146135572-146135585 chr6:146135786-146135799 chr6:146135628-146135637 chr6:146136748-146136759
12	TBL1XR1	chr6:146136896-146137178	GM12878	blood:	n/a	n/a
13	MAZ	chr6:146134947-146137291	K562	blood:	n/a	chr6:146136755-146136765
14	ZNF143	chr6:146136622-146137350	GM12878	blood:	n/a	n/a
15	MAZ	chr6:146134739-146137396	IMR90	lung:	n/a	chr6:146136755-146136765
16	E2F4	chr6:146137033-146137051	MCF10A-Er-Src	breast:	n/a	n/a
17	POLR2A	chr6:146134702-146137207	Hela-S3	cervix:	n/a	n/a
18	POLR2A	chr6:146134474-146137860	K562	blood:	n/a	n/a
19	MXI1	chr6:146134308-146137685	SK-N-SH	brain:	n/a	n/a
20	POLR2A	chr6:146134836-146137061	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:146052168..146062191-chr6:146124046..146141258,59	K562	blood:
2	chr6:146054764..146058281-chr6:146133205..146137397,13	MCF-7	breast:
3	chr6:146047378..146061811-chr6:146118130..146137627,77	K562	blood:
4	chr6:146055814..146058166-chr6:146135376..146138309,3	MCF-7	breast:
5	chr6:146136120..146137977-chr6:146284631..146286434,2	K562	blood:

Variant related genes	Relation type
FBXO30	TF binding region
ENSG00000146414	Chromatin interaction
ENSG00000270828	Chromatin interaction
ENSG00000112425	Chromatin interaction
ENSG00000270638	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs6900364	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6902535	0.83[AFR][1000 genomes]
rs6907083	0.97[AFR][1000 genomes]
rs6922458	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6925909	1.00[AMR][1000 genomes]
rs6936139	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6938980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7742951	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7744076	0.88[AFR][1000 genomes]
rs7744542	0.88[AFR][1000 genomes]
rs7761877	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7772405	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146132800-146137400	Active TSS	A549	lung
2	chr6:146133200-146137200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:146133400-146137200	Active TSS	H1 Cell Line	embryonic stem cell
4	chr6:146133600-146137400	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr6:146133600-146137400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:146133800-146137200	Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr6:146133800-146137200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:146133800-146137400	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr6:146134000-146137200	Active TSS	HUES64 Cell Line	embryonic stem cell
10	chr6:146134000-146137200	Active TSS	Brain Inferior Temporal Lobe	brain
11	chr6:146134400-146137200	Active TSS	H9 Cell Line	embryonic stem cell
12	chr6:146134800-146137200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:146136000-146137200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:146136000-146137400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:146136200-146137200	Flanking Active TSS	Primary B cells from cord blood	blood
16	chr6:146136200-146137200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
17	chr6:146136200-146137200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
18	chr6:146136200-146137200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:146136200-146137200	Flanking Active TSS	Duodenum Mucosa	Duodenum
20	chr6:146136200-146137200	Flanking Active TSS	HUVEC	blood vessel
21	chr6:146136200-146137200	Flanking Active TSS	NH-A	brain
22	chr6:146136200-146137400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
23	chr6:146136200-146137400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:146136200-146137400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
25	chr6:146136200-146137400	Flanking Active TSS	HMEC	breast
26	chr6:146136200-146137400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr6:146136400-146137200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
28	chr6:146136400-146137200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
29	chr6:146136400-146137200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:146136400-146137200	Flanking Active TSS	Colonic Mucosa	Colon
31	chr6:146136400-146137200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
32	chr6:146136400-146137400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr6:146136600-146137200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
34	chr6:146136600-146137200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
35	chr6:146136600-146137400	Flanking Active TSS	Primary hematopoietic stem cells	blood
36	chr6:146136600-146137400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
37	chr6:146136600-146137400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
38	chr6:146136600-146137400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr6:146136600-146137400	Flanking Active TSS	Fetal Brain Male	brain
40	chr6:146136600-146138000	Active TSS	Stomach Smooth Muscle	stomach
41	chr6:146136800-146137200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:146136800-146137200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
43	chr6:146136800-146137200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
44	chr6:146136800-146137200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:146136800-146137200	Flanking Active TSS	Brain Hippocampus Middle	brain
46	chr6:146136800-146137200	Flanking Active TSS	Fetal Intestine Large	intestine
47	chr6:146136800-146137200	Flanking Active TSS	Fetal Intestine Small	intestine
48	chr6:146136800-146137200	Flanking Active TSS	Fetal Lung	lung
49	chr6:146136800-146137200	Flanking Active TSS	Fetal Muscle Leg	muscle
50	chr6:146136800-146137200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle

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