Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GRM1-8	chr6:146147472-146148321	NONHSAT115409

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs6570734	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6900364	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs6900466	0.97[AFR][1000 genomes]
rs6902535	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6903606	0.91[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6904493	1.00[AMR][1000 genomes]
rs6905432	1.00[AMR][1000 genomes]
rs6918554	1.00[AMR][1000 genomes]
rs6920529	0.83[AMR][1000 genomes]
rs6922458	0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs6925909	0.92[YRI][hapmap]
rs6928306	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6938980	0.97[AFR][1000 genomes]
rs6941104	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7742951	0.93[AFR][1000 genomes]
rs7744076	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7744542	0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7745133	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs7756614	0.84[YRI][hapmap]
rs7761877	1.00[YRI][hapmap];0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146136800-146165200	Weak transcription	Lung	lung
2	chr6:146137000-146150200	Weak transcription	Aorta	Aorta
3	chr6:146137000-146150200	Weak transcription	Ovary	ovary
4	chr6:146137400-146167200	Weak transcription	Primary B cells from cord blood	blood
5	chr6:146137600-146156400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:146137800-146150200	Weak transcription	Left Ventricle	heart
7	chr6:146137800-146152800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:146137800-146159600	Weak transcription	Psoas Muscle	Psoas
9	chr6:146137800-146163000	Weak transcription	Fetal Stomach	stomach
10	chr6:146138000-146150000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:146138000-146157000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:146140000-146157200	Weak transcription	HSMMtube	muscle
13	chr6:146146400-146149800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:146146600-146150200	Weak transcription	Skeletal Muscle Male	skeletal muscle

Quick Search: