Variant report

Variant	rs6941104
Chromosome Location	chr6:146157874-146157875
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:146131042..146132915-chr6:146157627..146159920,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FBXO30-1	chr6:146156331-146158701	l_3286_chr6:146156330-146160471_brain

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs6570734	1.00[AMR][1000 genomes]
rs6900364	0.92[YRI][hapmap]
rs6902535	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6903606	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs6904493	1.00[AMR][1000 genomes]
rs6905432	1.00[AMR][1000 genomes]
rs6907083	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6918554	1.00[AMR][1000 genomes]
rs6920529	0.83[AMR][1000 genomes]
rs6922458	0.84[YRI][hapmap]
rs6928306	1.00[AMR][1000 genomes]
rs7744076	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7744542	0.84[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7745133	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs7756614	0.84[YRI][hapmap]
rs7761877	0.86[LWK][hapmap];0.93[MKK][hapmap];0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146136800-146165200	Weak transcription	Lung	lung
2	chr6:146137400-146167200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:146137800-146159600	Weak transcription	Psoas Muscle	Psoas
4	chr6:146137800-146163000	Weak transcription	Fetal Stomach	stomach
5	chr6:146150600-146163000	Weak transcription	Left Ventricle	heart
6	chr6:146150600-146171200	Weak transcription	Aorta	Aorta
7	chr6:146150600-146174000	Weak transcription	Right Ventricle	heart
8	chr6:146156000-146158000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:146156200-146158000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr6:146156200-146158400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr6:146156400-146158200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr6:146156600-146158400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr6:146156800-146158800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr6:146157000-146158200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr6:146157000-146158200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:146157000-146158400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:146157200-146158000	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr6:146157200-146158000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:146157200-146158200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:146157200-146158200	Enhancers	Muscle Satellite Cultured Cells	--
21	chr6:146157200-146158200	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr6:146157200-146158200	Enhancers	HSMMtube	muscle
23	chr6:146157200-146158400	Enhancers	Hela-S3	cervix
24	chr6:146157200-146158400	Enhancers	NHEK	skin
25	chr6:146157200-146158600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:146157400-146158000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:146157400-146158000	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr6:146157400-146158000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:146157400-146158000	Enhancers	NH-A	brain
30	chr6:146157600-146158000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:146157600-146158400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr6:146157600-146158800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:146157600-146158800	Weak transcription	Placenta	Placenta
34	chr6:146157600-146163200	Weak transcription	Brain Germinal Matrix	brain
35	chr6:146157800-146158200	Enhancers	Osteobl	bone
36	chr6:146157800-146158400	Enhancers	NHDF-Ad	bronchial
37	chr6:146157800-146158800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:146157800-146159000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:146157800-146159200	Weak transcription	HMEC	breast
40	chr6:146157800-146159400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:146157800-146159400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:146157800-146162800	Weak transcription	Gastric	stomach

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