Variant report

Variant	rs6905432
Chromosome Location	chr6:146183763-146183764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs6570734	1.00[AMR][1000 genomes]
rs6902535	1.00[AMR][1000 genomes]
rs6903606	1.00[AMR][1000 genomes]
rs6904493	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6907083	1.00[AMR][1000 genomes]
rs6918554	1.00[AMR][1000 genomes]
rs6920529	0.83[AMR][1000 genomes]
rs6928306	1.00[AMR][1000 genomes]
rs6930700	0.83[AMR][1000 genomes]
rs6941104	1.00[AMR][1000 genomes]
rs7744076	1.00[AMR][1000 genomes]
rs7744542	1.00[AMR][1000 genomes]
rs7745133	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7753965	0.83[AMR][1000 genomes]
rs7761877	1.00[MEX][hapmap];0.88[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146172200-146202400	Weak transcription	Adipose Nuclei	Adipose
2	chr6:146177600-146204200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:146178200-146184200	Weak transcription	Primary B cells from cord blood	blood
4	chr6:146181800-146187600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:146182400-146186600	Weak transcription	Primary T cells from cord blood	blood
6	chr6:146182400-146196600	Weak transcription	Fetal Heart	heart
7	chr6:146182600-146184600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:146182600-146186600	Weak transcription	Aorta	Aorta
9	chr6:146182600-146187600	Weak transcription	Psoas Muscle	Psoas
10	chr6:146182800-146186400	Weak transcription	Brain Angular Gyrus	brain
11	chr6:146183200-146186000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:146183600-146188800	Enhancers	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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