Variant report

Variant	rs7753965
Chromosome Location	chr6:146388256-146388257
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs6570734	0.83[AMR][1000 genomes]
rs6903606	1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs6905432	0.83[AMR][1000 genomes]
rs6922458	1.00[YRI][hapmap]
rs6928306	0.83[AMR][1000 genomes]
rs6930700	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7744542	1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs7745133	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1029440	chr6:146349442-146407453	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146386400-146388600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr6:146387400-146389600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:146387600-146388400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:146388000-146390400	Weak transcription	Pancreas	Pancrea
5	chr6:146388200-146399800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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