Variant report

Variant	rs6928306
Chromosome Location	chr6:146338870-146338871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs6570734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6902535	1.00[AMR][1000 genomes]
rs6903606	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6904493	1.00[AMR][1000 genomes]
rs6905432	1.00[AMR][1000 genomes]
rs6907083	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6918554	1.00[AMR][1000 genomes]
rs6920529	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6922458	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs6930700	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6936139	0.96[AFR][1000 genomes]
rs6941104	1.00[AMR][1000 genomes]
rs7744076	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7744542	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7745133	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs7753965	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146337600-146339000	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr6:146337800-146339800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:146338400-146339400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:146338400-146339600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:146338800-146339000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr6:146338800-146339200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:146338800-146339400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:146338800-146339600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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