Variant report

Variant	rs6904493
Chromosome Location	chr6:146150168-146150169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs6570734	1.00[AMR][1000 genomes]
rs6902535	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6903606	1.00[AMR][1000 genomes]
rs6905432	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6907083	1.00[AMR][1000 genomes]
rs6918554	1.00[AMR][1000 genomes]
rs6920529	0.83[AMR][1000 genomes]
rs6928306	1.00[AMR][1000 genomes]
rs6941104	1.00[AMR][1000 genomes]
rs7744076	1.00[AMR][1000 genomes]
rs7744542	1.00[AMR][1000 genomes]
rs7745133	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146136800-146165200	Weak transcription	Lung	lung
2	chr6:146137000-146150200	Weak transcription	Aorta	Aorta
3	chr6:146137000-146150200	Weak transcription	Ovary	ovary
4	chr6:146137400-146167200	Weak transcription	Primary B cells from cord blood	blood
5	chr6:146137600-146156400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:146137800-146150200	Weak transcription	Left Ventricle	heart
7	chr6:146137800-146152800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:146137800-146159600	Weak transcription	Psoas Muscle	Psoas
9	chr6:146137800-146163000	Weak transcription	Fetal Stomach	stomach
10	chr6:146138000-146157000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:146140000-146157200	Weak transcription	HSMMtube	muscle
12	chr6:146146600-146150200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr6:146149800-146151200	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr6:146150000-146150600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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