Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:146152448..146155093-chr6:146194869..146196693,2	MCF-7	breast:
2	chr6:146142328..146146619-chr6:146150916..146155602,4	K562	blood:
3	chr6:146151496..146154428-chr6:146155658..146157226,2	K562	blood:
4	chr6:146134017..146135880-chr6:146153560..146155544,2	K562	blood:
5	chr6:146133026..146135079-chr6:146152684..146154292,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs6570734	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6900364	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs6900466	0.88[AFR][1000 genomes]
rs6902535	1.00[AMR][1000 genomes]
rs6903606	0.92[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6904493	1.00[AMR][1000 genomes]
rs6905432	1.00[AMR][1000 genomes]
rs6907083	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6918554	1.00[AMR][1000 genomes]
rs6920529	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6922458	0.92[YRI][hapmap];0.86[AFR][1000 genomes]
rs6928306	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6936139	0.84[AFR][1000 genomes]
rs6938980	0.88[AFR][1000 genomes]
rs6941104	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7742951	0.84[AFR][1000 genomes]
rs7744542	0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7745133	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs7756614	1.00[ASW][hapmap];0.86[YRI][hapmap]
rs7761877	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146136800-146165200	Weak transcription	Lung	lung
2	chr6:146137400-146167200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:146137600-146156400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:146137800-146159600	Weak transcription	Psoas Muscle	Psoas
5	chr6:146137800-146163000	Weak transcription	Fetal Stomach	stomach
6	chr6:146138000-146157000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:146140000-146157200	Weak transcription	HSMMtube	muscle
8	chr6:146150600-146155000	Weak transcription	Ovary	ovary
9	chr6:146150600-146163000	Weak transcription	Left Ventricle	heart
10	chr6:146150600-146171200	Weak transcription	Aorta	Aorta
11	chr6:146150600-146174000	Weak transcription	Right Ventricle	heart
12	chr6:146151600-146157200	Weak transcription	Osteobl	bone

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