Variant report

Variant	rs7745133
Chromosome Location	chr6:146171581-146171582
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs6570734	1.00[AMR][1000 genomes]
rs6900364	0.93[YRI][hapmap]
rs6902535	1.00[AMR][1000 genomes]
rs6903606	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs6904493	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6905432	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6907083	1.00[AMR][1000 genomes]
rs6918554	1.00[AMR][1000 genomes]
rs6920529	0.83[AMR][1000 genomes]
rs6922458	0.86[YRI][hapmap]
rs6928306	1.00[AMR][1000 genomes]
rs6930700	0.83[AMR][1000 genomes]
rs6941104	1.00[AMR][1000 genomes]
rs7744076	1.00[AMR][1000 genomes]
rs7744542	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs7753965	0.83[AMR][1000 genomes]
rs7761877	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3377795	chr6:146171490-146171691	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146150600-146174000	Weak transcription	Right Ventricle	heart
2	chr6:146163800-146175000	Weak transcription	Left Ventricle	heart
3	chr6:146170400-146172200	Enhancers	Adipose Nuclei	Adipose
4	chr6:146170600-146172600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:146170800-146171800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:146171200-146171600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:146171200-146171600	Enhancers	Aorta	Aorta
8	chr6:146171200-146171600	Enhancers	Psoas Muscle	Psoas
9	chr6:146171200-146171800	Enhancers	HUVEC	blood vessel
10	chr6:146171200-146172000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:146171200-146172000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:146171200-146172000	Enhancers	Osteobl	bone
13	chr6:146171200-146172400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:146171400-146171600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:146171400-146171600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
16	chr6:146171400-146171600	ZNF genes & repeats	Primary T cells from cord blood	blood
17	chr6:146171400-146171600	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:146171400-146171600	Enhancers	NH-A	brain
19	chr6:146171400-146172000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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