Variant report

Variant	rs6930700
Chromosome Location	chr6:146386784-146386785
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs6570734	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6903606	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6905432	0.83[AMR][1000 genomes]
rs6920529	0.93[AFR][1000 genomes]
rs6922458	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs6928306	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6936139	0.93[AFR][1000 genomes]
rs7744542	1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7745133	0.83[AMR][1000 genomes]
rs7753965	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1029440	chr6:146349442-146407453	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146386400-146386800	Enhancers	H9 Cell Line	embryonic stem cell
2	chr6:146386400-146388600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr6:146386600-146387000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr6:146386600-146387400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:146386600-146387400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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