Variant report

Variant	rs7742951
Chromosome Location	chr6:146099034-146099035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs6900364	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6900466	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6902535	0.80[AFR][1000 genomes]
rs6907083	0.93[AFR][1000 genomes]
rs6922458	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6925909	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6938980	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7744076	0.84[AFR][1000 genomes]
rs7744542	0.84[AFR][1000 genomes]
rs7761877	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7772405	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146096200-146105800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:146098200-146099400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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