Variant report

Variant	rs6904554
Chromosome Location	chr6:143532759-143532760
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28525292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59250532	1.00[EUR][1000 genomes]
rs6904971	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7451854	1.00[EUR][1000 genomes]
rs7771725	0.83[AFR][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143479600-143534600	Weak transcription	Gastric	stomach
2	chr6:143499200-143534600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:143501400-143534800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:143505600-143534600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:143514200-143545400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:143514400-143545200	Weak transcription	HMEC	breast
7	chr6:143516000-143545600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:143520200-143533600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr6:143524400-143535200	Weak transcription	Right Atrium	heart
10	chr6:143525600-143533600	Weak transcription	Aorta	Aorta
11	chr6:143525600-143534800	Weak transcription	Left Ventricle	heart
12	chr6:143525600-143544200	Weak transcription	HepG2	liver
13	chr6:143525800-143534000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr6:143525800-143534600	Weak transcription	Fetal Intestine Large	intestine
15	chr6:143525800-143545800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr6:143527200-143534600	Weak transcription	Fetal Lung	lung
17	chr6:143527400-143534600	Weak transcription	Fetal Kidney	kidney
18	chr6:143527400-143552000	Weak transcription	Brain Angular Gyrus	brain
19	chr6:143527400-143578800	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:143527800-143534600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr6:143528400-143533400	Weak transcription	Fetal Heart	heart
22	chr6:143528800-143536400	Weak transcription	Psoas Muscle	Psoas
23	chr6:143529200-143534600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr6:143530600-143534600	Weak transcription	Liver	Liver
25	chr6:143531200-143534600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr6:143531200-143534600	Weak transcription	Fetal Intestine Small	intestine
27	chr6:143531200-143535600	Weak transcription	K562	blood
28	chr6:143531800-143536400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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