Variant report

Variant	rs6934609
Chromosome Location	chr6:143536568-143536569
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143528712..143531320-chr6:143533840..143537252,3	K562	blood:
2	chr6:143514700..143516541-chr6:143535593..143537913,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28525292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59250532	1.00[EUR][1000 genomes]
rs6904554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6904971	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7451854	1.00[EUR][1000 genomes]
rs7771725	1.00[YRI][hapmap];0.83[AFR][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143514200-143545400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:143514400-143545200	Weak transcription	HMEC	breast
3	chr6:143516000-143545600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:143525600-143544200	Weak transcription	HepG2	liver
5	chr6:143525800-143545800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:143527400-143552000	Weak transcription	Brain Angular Gyrus	brain
7	chr6:143527400-143578800	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:143533800-143542000	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:143535000-143540400	Weak transcription	Fetal Intestine Large	intestine
10	chr6:143535000-143540600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:143535000-143541000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr6:143535000-143541000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr6:143535000-143541000	Weak transcription	Fetal Intestine Small	intestine
14	chr6:143535000-143541600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr6:143535000-143541600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr6:143535000-143544200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:143535000-143544200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr6:143535000-143545200	Weak transcription	Pancreas	Pancrea
19	chr6:143535000-143549600	Weak transcription	Lung	lung
20	chr6:143535000-143551000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:143535000-143568000	Weak transcription	Aorta	Aorta
22	chr6:143535200-143538000	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr6:143535400-143536800	Strong transcription	Liver	Liver
24	chr6:143535800-143536600	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr6:143536000-143537200	Weak transcription	Fetal Heart	heart
26	chr6:143536000-143543000	Weak transcription	Ovary	ovary
27	chr6:143536000-143543000	Weak transcription	Right Atrium	heart
28	chr6:143536200-143536600	Genic enhancers	K562	blood
29	chr6:143536200-143537400	Weak transcription	Left Ventricle	heart
30	chr6:143536200-143546000	Weak transcription	Right Ventricle	heart
31	chr6:143536400-143536800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:143536400-143536800	Enhancers	Stomach Mucosa	stomach
33	chr6:143536400-143537600	Enhancers	Fetal Lung	lung
34	chr6:143536400-143538000	Enhancers	Fetal Stomach	stomach
35	chr6:143536400-143538000	Enhancers	Psoas Muscle	Psoas
36	chr6:143536400-143538000	Enhancers	HSMMtube	muscle

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