The 2.0 version of rSNPBase

Variant report

Variant rs6905189
Chromosome Location chr6:57248584-57248585
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:71 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:57199800-57251000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr6:57236800-57251000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
3 chr6:57238400-57261000 Weak transcription Rectal Mucosa Donor 29 rectum
4 chr6:57241200-57254800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr6:57241200-57262600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
6 chr6:57242000-57249800 Weak transcription NHEK skin
7 chr6:57242800-57259800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
8 chr6:57243000-57250600 Weak transcription Primary T killer naive cells fromperipheralblood blood
9 chr6:57243200-57250400 Weak transcription Rectal Smooth Muscle rectum
10 chr6:57243200-57254200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
11 chr6:57243600-57249000 Weak transcription Psoas Muscle Psoas
12 chr6:57243600-57250600 Weak transcription iPS-18 Cell Line embryonic stem cell
13 chr6:57243600-57251400 Weak transcription Small Intestine intestine
14 chr6:57243600-57254800 Weak transcription NH-A brain
15 chr6:57244400-57259200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
16 chr6:57244800-57249000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
17 chr6:57244800-57252200 Strong transcription Dnd41 blood
18 chr6:57245200-57251400 Weak transcription Gastric stomach
19 chr6:57245200-57257000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
20 chr6:57245400-57248800 Weak transcription Primary T helper cells PMA-I stimulated --
21 chr6:57245400-57249800 Weak transcription Liver Liver
22 chr6:57245400-57250000 Weak transcription Esophagus oesophagus
23 chr6:57245400-57250400 Weak transcription Pancreas Pancrea
24 chr6:57245400-57250600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
25 chr6:57245400-57251200 Weak transcription H9 Cell Line embryonic stem cell
26 chr6:57245400-57253200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
27 chr6:57245400-57253600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
28 chr6:57245400-57254600 Weak transcription Primary B cells from peripheral blood blood
29 chr6:57245600-57251000 Weak transcription Thymus Thymus
30 chr6:57245600-57253600 Weak transcription Fetal Adrenal Gland Adrenal Gland
31 chr6:57245600-57254800 Weak transcription Adipose Nuclei Adipose
32 chr6:57245600-57256200 Weak transcription Fetal Intestine Large intestine
33 chr6:57245600-57261200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
34 chr6:57245800-57253200 Weak transcription Breast Myoepithelial Primary Cells Breast
35 chr6:57245800-57254000 Weak transcription Primary T regulatory cells fromperipheralblood blood
36 chr6:57245800-57254800 Weak transcription Fetal Thymus thymus
37 chr6:57245800-57256000 Weak transcription Fetal Brain Male brain
38 chr6:57246000-57248800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
39 chr6:57246000-57248800 Weak transcription Primary hematopoietic stem cells short term culture blood
40 chr6:57246000-57248800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr6:57246000-57248800 Weak transcription Aorta Aorta
42 chr6:57246000-57249000 Weak transcription Primary T cells fromperipheralblood blood
43 chr6:57246000-57249000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr6:57246000-57250400 Weak transcription HUES6 Cell Line embryonic stem cell
45 chr6:57246000-57251200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
46 chr6:57246000-57251600 Weak transcription Primary T helper cells fromperipheralblood blood
47 chr6:57246000-57252600 Weak transcription Muscle Satellite Cultured Cells --
48 chr6:57246000-57253600 Weak transcription GM12878-XiMat blood
49 chr6:57246000-57254000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
50 chr6:57246000-57255200 Weak transcription Primary hematopoietic stem cells blood

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Last update: Aug 31, 2015