Variant report

Variant	rs9475843
Chromosome Location	chr6:57198293-57198294
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:57197771..57200072-chr6:57204216..57205882,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs6905189	0.84[YRI][hapmap]
rs7738549	1.00[AMR][1000 genomes]
rs9464435	1.00[AMR][1000 genomes]
rs9475849	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475904	1.00[AMR][1000 genomes]
rs9475907	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv2758056	chr6:57184541-57562604	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	esv2759432	chr6:57184541-57562604	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1034139	chr6:57192993-57253423	ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1022055	chr6:57192993-57353692	Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:57183000-57199400	Weak transcription	HSMMtube	muscle
2	chr6:57183200-57199200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:57184200-57201200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:57184600-57199200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:57184800-57199600	Strong transcription	HSMM	muscle
6	chr6:57190000-57199800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:57190000-57200000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:57191800-57199800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:57192000-57199600	ZNF genes & repeats	GM12878-XiMat	blood
10	chr6:57192000-57200000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:57192200-57199800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
12	chr6:57192200-57199800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
13	chr6:57192200-57199800	ZNF genes & repeats	Dnd41	blood
14	chr6:57192600-57199800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:57192600-57200000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:57193000-57199200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:57193000-57199400	Weak transcription	Placenta	Placenta
18	chr6:57193000-57201000	Weak transcription	Gastric	stomach
19	chr6:57193000-57203000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:57193600-57199400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr6:57193600-57207400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr6:57194200-57199800	ZNF genes & repeats	Primary T cells from cord blood	blood
23	chr6:57194400-57198600	Weak transcription	Fetal Kidney	kidney
24	chr6:57194600-57198800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:57194600-57199000	Weak transcription	Left Ventricle	heart
26	chr6:57194600-57199200	Weak transcription	Thymus	Thymus
27	chr6:57194600-57201200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:57194600-57202000	Weak transcription	Fetal Stomach	stomach
29	chr6:57194600-57214800	Weak transcription	Small Intestine	intestine
30	chr6:57194600-57215200	Weak transcription	Ovary	ovary
31	chr6:57194600-57226200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:57194600-57244800	Weak transcription	Spleen	Spleen
33	chr6:57194800-57198800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:57194800-57199400	Weak transcription	Rectal Smooth Muscle	rectum
35	chr6:57194800-57202000	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr6:57194800-57202200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr6:57194800-57206000	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr6:57194800-57211600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr6:57195000-57198800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr6:57195000-57199400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr6:57195000-57201400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:57195600-57198600	Weak transcription	Fetal Brain Male	brain
43	chr6:57195600-57198600	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr6:57195600-57198800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:57195600-57198800	Weak transcription	HepG2	liver
46	chr6:57195600-57199600	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr6:57195600-57201400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr6:57195600-57202400	Weak transcription	Duodenum Mucosa	Duodenum
49	chr6:57195600-57204600	Weak transcription	Colon Smooth Muscle	Colon
50	chr6:57195600-57212600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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